Johannes Werner PhD - Publications

2020

Öztürk B, Werner J, Meier-Kolthoff, JP, Bunk B, Sproer C, Springael D:  Comparative genomics suggests mechanisms of genetic adaptation towards the catabolism of the phenylurea herbicide linuron in Variovorax. Genome Biol Evol. doi: 10.1093/gbe/evaa085

Cyriaque V, Géron A, Billon G, Nesme J, Werner J, Gillian DC, Sørensen S, Wattiez R:Metal-induced bacterial interactions promote diversity in river-sediment microbiomes. FEMS Microbiol Ecol. doi: 10.1093/femsec/fiaa076

Jordan SFA, Treude T, Leifer I, Janßen R, Werner J, Schulz-Vogt H, Schmale O: Bubble-mediated transport of benthic microorganisms into the water column: Identification of methanotrophs and implication of seepage intensity on transport efficiency. Sci Rep. doi: 10.1038/s41598-020-61446-9

Werner J, Nour E, Bunk B, Sproer C, Smalla K, Springael D, Oeztuerk B: PromA Plasmids Are Instrumental in the Dissemination of Linuron Catabolic Genes Between Different Genera. Front Microbiol. doi: 10.3389/fmicb.2020.00149

Yakneen S, Waszak SM, PCAWG Technical Working Group, Gertz M, Korbel JO, PCAWG Consortium: Butler enables rapid cloud-based analysis of thousands of human genomes. Nat Biotechnol. doi: 10.1038/s41587-019-0360-3

The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium: Pan-cancer analysis of whole genomes. Nature. doi: 10.1038/s41586-020-1969-6

2019

Janßen R, Skeff W, Werner J, Wirth MA, Kreikemeyer B, Schulz-Bull D, Labrenz M: A Glyphosate Pulse to Brackish Long-Term Microcosms Has a Greater Impact on the Microbial Diversity and Abundance of Planktonic Than of Biofilm Assemblages. Front Mar Sci 6:758. doi: 10.3389/fmars.2019.00758

Werner J, Géron A, Kerssemakers J, Mattalana-Surget S: mPies: a novel metaproteomics tool for the creation of relevant protein databases and automatized protein annotation. Biol Direct 14:21. doi: 10.1186/s13062-019-0253-x

Géron A, Werner J, Wattiez R, Lebaron P, Mattalana-Surget S: Deciphering the Functioning of Microbial Communities: Shedding Light on the Critical Steps in Metaproteomics. Front Microbiol 10:2395. doi: 10.3389/fmicb.2019.02395

Paramasivam N, Hübschmann D, Toprak UH, Ishaque N, Neidert M, Schrimpf D, Stichel D, Reuss D, Sievers P, Reinhardt A, Wefers AK, Jones DTW, Gu Z, Werner J, Uhrig S, Wirsching H-G, Schick M, Bewerunge-Hudler M, Beck K, Brehmer S, Urbschat S, Seiz-Rosenhagen M, Hänggi D, Herold-Mende C, Ketter R, Eils R, Ram Z, Pfister SM, Wick W, Weller M, Grossmann R, von Deimling, A, Schlesner M, Sahm F: Mutational patterns and regulatory networks in epigenetic subgroups of meningioma. Acta Neuropathol 138(2):295-308. doi: 10.1007/s00401-019-02008-w

2018

Matallana Surget J, Werner J, Wattiez R, Lebaron K, Intertaglia L, Regan C, Morris J, Teeling H, Ferrer M, Golyshin PN, Gerogiorgis D, Reilly SI, Lebaron P: Proteogenomic analysis of Epibacterium mobile BBCC367, a relevant marine bacterium isolated from the South Pacific Ocean. Front Microbiol 9:3125. doi: 10.3389/fmicb.2018.03125

2014

Jan C, Petersen JM, Werner J, Teeling H, Huang S, Glöckner FO, Golyshina OV, Dubilier N, Golyshin PN, Jebbar M, Cambon-Bonavita MA: The gill chamber epibiosis of deep-sea shrimp Rimicaris exoculata: an in-depth metagenomic investigation and discovery of Zetaproteobacteria. Environ Microbiol 16(9):2723-2738. doi: 10.1111/1462-2920.12406

Werner J, Ferrer M, Michel G, Mann AJ, Huang S, Juarez S, Ciordia S, Albar JP, Alcaide M, La Cono V, Yakimov MM, Antunes A, Taborda M, da Costa MS, Hai T, Glöckner FO, Golyshina OV, Golyshin PN, Teeling H: Halorhabdus tiamatea: proteogenomics and glycosidase activity measurements identify the first cultivated euryarchaeon from a deep-sea anoxic brine lake as potential polysaccharide degrader. Environ Microbiol 16(8):2525-2537. doi: 10.1111/1462-2920.12393

2013

Mann AJ, Hahnke RL, Huang S, Werner J, Xing P, Barbeyron T, Huettel B, Stüber K, Reinhardt R, Harder J, Glöckner FO, Amann RI, Teeling H: The genome of the algae-associated marine flavo-bacterium Formosa agariphila KMM 3901T reveals a broad potential for the degradation of algal polysaccharides. Appl Environ Microbiol 79(21):6813-6822. doi: 10.1128/AEM.01937-13

Golyshin PN, Werner J, Chernikova TN, Tran H, Ferrer M, Yakimov MM, Teeling H, Golyshina OV: Genome sequence of Thalassolituus oleivorans MIL 1 (DSM 14913T). Genome Announc 1(2):e0014113. doi: 10.1128/genomeA.00141-13

2012

Ferrer M, Werner J, Chernikova TN, Bargiela R, Fernández L, La Cono V, Waldmann J, Teeling H, Golyshina OV, Glöckner FO, Yakimov MM, Golyshin PN: Unveiling microbial life in the new deep-sea hyper-saline Lake Thetis. Part II: a metagenomic study. Environ Microbiol 14(1):268-281. doi: 10.1111/j.1462-2920.2011.02634.x

2010

Schulz P,  Werner J, Stauber T, Henriksen K, Fendler K: The G215R mutation in the Cl-/H+-antiporter ClC-7 found in ADO II osteopetrosis does not abolish function but causes a severe trafficking defect. PLoS ONE 5(9):e12585. doi: 10.1371/journal.pone.0012585